RNAmediator.ConstraintPLFold.write_unconstraint

RNAmediator.ConstraintPLFold.write_unconstraint(save, sid, seq, unconstrained, data: PLFoldOutput, region, window, span, temperature, outdir, rawentry=None)

Fold Sequences with paired constraint

Parameters:

• save (bool Should npy or npy and gz output be saved) –

• sid (str Id for Sequence) –

• seq (str Sequence to fold) –

• unconstrained (str Infix for ouput files of unconstrained folding) –

• data (PLFoldOutput Output of call to fold_unconstraint) –

• region (int -u Option of RNAplfold) –

• window (int Size of window to fold) –

• span (int Maximum base-pair span to be evaluated) –

• temperature (float Temperature) –

• outdir (str Location of the Outpu directory. If it is an empty string os.cwd() is used) –

• rawentry (str Name for raw file to pass to write_unconstraint) –