RNAmediator.ConstraintPLFold

Functions

check_raw_existing(sid, unconstrained, cons, ...)	Check if output file from unconstrained folding exists
checkexisting(sid, paired, unpaired, cons, ...)	Check if output file from constraint folding exists
constrain_seq(sid, seq, start, end, window, ...)	Fold Sequences with constraint
constrain_seq_paired(sid, seq, fstart, fend, ...)	Fold Sequences with paired constraint
fold_unconstraint(seq, id, region, window, ...)	Fold Sequence without constraint
main([args])	Main process, prepares run_settings dict, creates logging process queue and worker processes for folding, calls fold
pl_fold(window, span, region, temperature, ...)	Run RNAplfold
scan_seq(sid, seq, start, end, window, span, ...)	Fold Sequences without constraint for structure profile generation
write_constraint(save, sid, seq, paired, ...)	Write output of constraint folding
write_unconstraint(save, sid, seq, ...[, ...])	Fold Sequences with paired constraint