RNAmediator.ConstraintPLFold.scan_seq

RNAmediator.ConstraintPLFold.scan_seq(sid, seq, start, end, window, span, region, temperature, multi, save, outdir, unconstrained=None, queue=None, configurer=None, level=None)

Fold Sequences without constraint for structure profile generation

Parameters:

• sid (str Id for Sequence) –

• seq (str Sequence to fold) –

• start (int Start of subsequence to fold) –

• end (int End of subsequence to fold) –

• window (int Size of window to fold) –

• span (int Maximum base-pair span to be evaluated) –

• region (int -u Option of RNAplfold) –

• temperature (float Temperature) –

• multi (int Multiplyer for window extension) –

• save (bool Should npy or npy and gz output be saved) –

• outdir (str Location of the Outpu directory. If it is an empty string os.cwd() is used) –

• unconstrained (str Infix for ouput files of unconstrained folding) –

• queue (multiprocessing_queue Logging process queue) –

• configurer (multiprocessing_config for Logging processes) –

• level (logging.level Level for log process) –

Return type:

Call to fold_unconstraint, 1 on success