RNAmediator.ConstraintPLFold.write_constraint

RNAmediator.ConstraintPLFold.write_constraint(save, sid, seq, paired, unpaired, data_u, data_p, constrain, region, diff_nu, diff_np, window, span, temperature, outdir)

Write output of constraint folding

Parameters:

• save (bool Should npy or npy and gz output be saved) –

• sid (str Id for Sequence) –

• seq (str Sequence to fold) –

• paired (str Infix for output files of paired constraint) –

• unpaired (str Infix for ouput files of unpaired constraint) –

• data_u (PLFoldOutput Output of call to fold_unconstraint for unpaired constraint) –

• data_p (PLFoldOutput Output of call to fold_unconstraint for paired constraint) –

• constraint (str Id od constraint) –

• region (int -u Option of RNAplfold) –

• diff_nu (np.array Diff between unconstrained and constraint unpaired) –

• diff_np (np.array Diff between unconstrained and constraint paired) –

• window (int Size of window to fold) –

• span (int Maximum base-pair span to be evaluated) –

• temperature (float Temperature) –

• outdir (str Location of the Outpu directory. If it is an empty string os.cwd() is used) –