RNAmediator.ConstraintPLFold.fold_unconstraint

RNAmediator.ConstraintPLFold.fold_unconstraint(seq, id, region, window, span, temperature, unconstrained, save, outdir, rawentry=None, locws=None, locwe=None, queue=None, configurer=None, level=None)

Fold Sequence without constraint

Parameters:

• seq (str Sequence to fold) –

• id (str Id for Sequence) –

• region (int -u Option of RNAplfold) –

• window (int Size of window to fold) –

• span (int Maximum base-pair span to be evaluated) –

• temperature (float Temperature) –

• unconstrained (str Infix for ouput files of unconstrained folding) –

• save (bool Should npy or npy and gz output be saved) –

• outdir (str Location of the Outpu directory. If it is an empty string os.cwd() is used) –

• rawentry (str Name for raw file to pass to write_unconstraint) –

• locws (int Local Window start) –

• locwe (int Local Window end) –

• queue (multiprocessing_queue Logging process queue) –

• configurer (multiprocessing_config for Logging processes) –

• level (logging.level Level for log process) –

Returns:

PLFoldOutput

Return type:

PLFoldOutput object