RNAmediator.Tweaks.RNAtweaks

Functions

api_rnafold(sequence, span[, temperature, ...])	api wrapper for RNAfold
api_rnaplfold(sequence, window, span[, ...])	api wrapper for RNAplfold
bpp_callback(v, v_size, i, maxsize, what, data)	Callback function for ViennaRNA API base-pair probability calculation
cmd_rnafold(sequence, window, span[, ...])	command line wrapper for RNAplfold
cmd_rnaplfold(sequence, window, span[, ...])	command line wrapper for RNAplfold
get_location(entry)	Returns location of folding window in genomic or local coordinates
get_location_withchrom(entry)	Returns location of folding window in genomic or local coordinates with chromosome
printdiff(a[, o])	Print difference between numpy arrays

Classes

FoldOutput([condition, anno, gibbs, ...])	Output wrapper for ouput files of RNAfold
PLFoldOutput(text)	Output wrapper for unpaired probability files of RNAplfold