RNAmediator.Tweaks.RNAtweaks.api_rnafold
- RNAmediator.Tweaks.RNAtweaks.api_rnafold(sequence: str, span: int, temperature: float = 37, constraint: Iterable[Tuple] = None, FoldOut: FoldOutput = None, coordinates: list = [None, None, None, None]) FoldOutput
api wrapper for RNAfold
- Parameters:
sequence (str) – string representation of the sequence either RNA or DNA
span (int) – RNAfold basepair span option
temperature (float) – RNAplfold temperature setting
constraint (Iterable[Tuple[str, int, int, int, int]], optional) – Constraints as Tuple in format (paired(p)/unpaired(u), start, end) (default is None) !!Warning!! ZERO BASED !!Warning!!
FoldOut (FoldOutput, optional) – existing FoldOutput object to append use
coordinates (list([gs, ge, tostart, toend]), optional) – Coordinates of genes
- Returns:
FoldOutput object
- Return type: