RNAmediator.GenerateBigWig.read_chromsize

RNAmediator.GenerateBigWig.read_chromsize(cs, chromstr=None, limit=32)

Read chromosome sizes from file

Parameters:

• cs (str) – File to read from

• limit (int) – Max length for chrom names, only 32 characters allowed by ucsc

Returns:

sizes – List of tuples with chromosome name and size

Return type:

list(tuple(str,int))